Publications

CARRS TEAM PUBLICATION LIST

Listed in chronological order (most recent first)

1. Jenkins AK, Shelton MA, Yin R, Gorczyca MT, Zong W, Glausier JR, Lewis DA, Tseng GC, Seney ML, McClung CA. Disentangling transcriptomic heterogeneity within the human subgenual anterior cingulate cortex. Cereb Cortex. 2024 Jul 3;34(7). pii: bhae291.PMID: 39051661.

2. Burns JN, Jenkins AK, Yin R, Zong W, Vadnie CA, DePoy LM, Petersen KA, Tsyglakova M, Scott MR, Tseng GC, Huang YH, McClung CA. Molecular and cellular rhythms in excitatory and inhibitory neurons in the mouse prefrontal cortex. bioRxiv. 2024 Aug 7. pii: 2024.07.05.601880. PMID: 39005410.

3. Zong W, Li D, Seney ML, Mcclung CA, Tseng GC. Model-based multifacet clustering with high-dimensional omics applications. Biostatistics. 2024 Jul 13. pii:kxae020. PMID: 39002144.

4. Bender BN, Stringfield SJ, Torregrossa MM. Changes in dorsomedial striatum activity during expression of goal-directed vs. habit-like cue-induced cocaine seeking. Addict Neurosci. 2024 Jun;11. pii: 100149. Epub 2024 Jan 28. PMID: 38957402.

5. DePoy LM, Petersen KA, Zong W, Ketchesin KD, Matthaei RC, Yin R, Perez MS, Vadnie CA, Becker-Krail D, Scott MR, Tseng GC, McClung CA. Cell-type and sex-specific rhythmic gene expression in the nucleus accumbens. Mol Psychiatry. 2024 Apr 27. PMID: 38678086.

6. Wang Y, Li D, Widjaja J, Guo R, Cai L, Yan R, Ozsoy S, Allocca G, Fang J, Dong Y, Tseng GC, Huang C, Huang YH. An EEG Signature of MCH Neuron Activities Predicts Cocaine Seeking. bioRxiv. 2024 Mar 29. pii: 2024.03.27.586887. Update in: Biol Psychiatry. 2024 Apr 26:S0006-3223(24)01257-5. PMID: 38586019.

7. Meyer N, Lok R, Schmidt C, Kyle SD, McClung CA, Cajochen C, Scheer FAJL, Jones MW, Chellappa SL. The sleep-circadian interface: A window into mental disorders. Proc Natl Acad Sci U S A. 2024 Feb 27;121(9):e2214756121. Epub 2024 Feb 23. PMID: 38394243.

8. Scott MR, McClung CA. Bipolar Disorder. Curr Opin Neurobiol. 2023 Dec;83. pii: 102801. Epub 2023 Oct 27. Review. PMID: 38223491.

9. Tapia AL, Wallace ML, Hasler BP, Holmes J, Pedersen SL. Effect of daily discrimination on naturalistic sleep health features in young adults. Health Psychol. 2024 Apr;43(4):298-309. Epub 2024 Jan 8. PMID: 38190204.

10. Petersen KA, Zong W, Depoy LM, Scott MR, Shankar VG, Burns JN, Cerwensky AJ, Kim SM, Ketchesin KD, Tseng GC, McClung CA. Comparative rhythmic transcriptome profiling of human and mouse striatal subregions. Neuropsychopharmacology. 2024 Apr;49(5):796-805. Epub 2024 Jan 5. PMID: 38182777.

11. He Y, Huang YH, Schlüter OM, Dong Y. Cue- versus reward-encoding basolateral amygdala projections to nucleus accumbens. Elife. 2023 Nov 14;12. PMID: 37963179.

12. Dollish HK, Tsyglakova M, McClung CA. Circadian rhythms and mood disorders: Time to see the light. Neuron. 2024 Jan 3;112(1):25-40. Epub 2023 Oct 18. PMID: 37858331.

13. Steinfeld MR, Torregrossa MM. Consequences of adolescent drug use. Transl Psychiatry. 2023 Oct 6;13(1):313. PMID: 37802983.

14. Smith DM, Torregrossa MM. The ventral tegmental area dopamine to lateral amygdala projection supports cocaine cue associative learning. bioRxiv. 2023 Aug 23. pii: 2023.08.22.554187. PMID: 37662292.

15. Bender BN, Stringfield SJ, Torregrossa MM. Changes in dorsomedial striatum activity mediate expression of goal-directed vs. habit-like cue-induced cocaine seeking. bioRxiv. 2023 Jul 26. pii: 2023.07.24.550364. Update in: Addict Neurosci. 2024 Jun;11:100149. PMID: 37546826.

16. Wallace ML, Mentch L, Wheeler BJ, Tapia AL, Richards M, Zhou S, Yi L, Redline S, Buysse DJ. Use and misuse of random forest variable importance metrics in medicine: demonstrations through incident stroke prediction. BMC Med Res Methodol. 2023 Jun 19;23(1):144. PMID: 37337173.

17. Zong W, Seney ML, Ketchesin KD, Gorczyca MT, Liu AC, Esser KA, Tseng GC, McClung CA, Huo Z. Experimental design and power calculation in omics circadian rhythmicity detection using the cosinor model. Stat Med. 2023 Aug 15;42(18):3236-3258. Epub 2023 Jun 2. PMID: 37265194.

18. Soehner AM, Wallace ML, Edmiston K, Chase HW, Lockovich J, Aslam H, Stiffler R, Graur S, Skeba A, Bebko G, Benjamin OE, Wang Y, Phillips ML. Neurobehavioral Reward and Sleep-Circadian Profiles Predict Present and Next-Year Mania/Hypomania Symptoms. Biol Psychiatry Cogn Neurosci Neuroimaging. 2023 Dec;8(12):1251-1261. Epub 2023 May 23. PMID: 37230386.

19. Hasler BP, Wallace ML, Graves JL, Witt R, Guo K, Buysse DJ, Siegle GJ, Clark DB. Pre-pandemic circadian phase predicts pandemic alcohol use among adolescents. J Sleep Res. 2024 Feb;33(1):e13905. Epub 2023 Apr 11. PMID: 37039532.

20. Wescott DL, Franzen PL, Hasler BP, Miller MA, Soehner AM, Smagula SF, Wallace ML, Hall MH, Roecklein KA. Elusive hypersomnolence in seasonal affective disorder: actigraphic and self-reported sleep in and out of depressive episodes. Psychol Med. 2023 Mar;53(4):1313-1322. Epub 2021 Jul 29. PMID: 37010222.

21. Bender BN, Torregrossa MM. Intermittent cocaine self-administration has sex-specific effects on addiction-like behaviors in rats. Neuropharmacology. 2023 Jun 1;230:109490. Epub 2023 Mar 6. PMID: 36889433.

22. Scott MR, Zong W, Ketchesin KD, Seney ML, Tseng GC, Zhu B, McClung CA. Twelve-hour rhythms in transcript expression within the human dorsolateral prefrontal cortex are altered in schizophrenia. PLoS Biol. 2023 Jan 24;21(1):e3001688. eCollection 2023 Jan. PMID: 36693045.

23. Xue X, Zong W, Huo Z, Ketchesin KD, Scott MR, Petersen KA, Logan RW, Seney ML, McClung C, Tseng G. DiffCircaPipeline: a framework for multifaceted characterization of differential rhythmicity. Bioinformatics. 2023 Jan 1;39(1). PMID: 36655766.

24. Stringfield SJ, Sanders BE, Suppo JA, Sved AF, Torregrossa MM. Nicotine Enhances Intravenous Self-administration of Cannabinoids in Adult Rats. Nicotine Tob Res. 2023 Apr 6;25(5):1022-1029. PubMed [citation] PMID:36426873.

25. Ketchesin KD, Zong W, Hildebrand MA, Scott MR, Seney ML, Cahill KM, Shankar VG, Glausier JR, Lewis DA, Tseng GC, McClung CA. Diurnal Alterations in Gene Expression Across Striatal Subregions in Psychosis. Biol Psychiatry. 2023 Jan 15;93(2):137-148. Epub 2022 Aug 24. PMID: 36302706.

26. Soehner AM, Hayes RA, Franzen PL, Goldstein TR, Hasler BP, Buysse DJ, Siegle GJ, Dahl RE, Forbes EE, Ladouceur CD, McMakin DL, Ryan ND, Silk JS, Jalbrzikowski M. Naturalistic Sleep Patterns are Linked to Global Structural Brain Aging inAdolescence. J Adolesc Health. 2023 Jan;72(1):96-104. Epub 2022 Oct 18. PMID: 36270890.

27. Wescott DL, Wallace ML, Hasler BP, Klevens AM, Franzen PL, Hall MH, Roecklein KA. Sleep and circadian rhythm profiles in seasonal depression. J Psychiatr Res. 2022 Dec;156:114-121. Epub 2022 Oct 10. PMID: 36244199.

28. Bertholomey ML, Nagarajan V, Smith DM, Torregrossa MM. Sex- and age-dependent effects of chronic corticosterone exposure on depressive-like, anxiety-like, and fear-related behavior: Role of amygdala glutamate receptors in the rat. Front Behav Neurosci. 2022 Sep 23;16:950000. eCollection 2022. PMID: 36212195.

29. Oh CH, Wallace ML, Germain A. Childhood trauma and gender: Synergistic and additive effects on sleep in healthy young adults. Sleep Health. 2022 Oct;8(5):498-504. Epub 2022 Aug 12. PMID: 35965190.

30. Guo R, Wang Y, Yan R, Chen B, Ding W, Gorczyca MT, Ozsoy S, Cai L, Hines RL, Tseng GC, Allocca G, Dong Y, Fang J, Huang YH. Rapid Eye Movement Sleep Engages Melanin-Concentrating Hormone Neurons to Reduce Cocaine Seeking. Biol Psychiatry. 2022 Dec 1;92(11):880-894. Epub 2022 Jun 13. PMID: 35953320.

31. Stepan ME, Wilckens KA, Hostler D, Wallace ML, Franzen PL. Physical Exertion Partially Mitigates Task-Switching Deficits From Sleep Loss: Implications for Firefighters. J Occup Environ Med. 2022 Oct 1;64(10):e622-e628. Epub 2022 Jul 21. PMID: 35901201.

32. Yu J, Sesack SR, Huang Y, Schlüter OM, Grace AA, Dong Y. Contingent Amygdala Inputs Trigger Heterosynaptic LTP at Hippocampus-To-Accumbens Synapses. J Neurosci. 2022 Aug 24;42(34):6581-6592. Epub 2022 Jul 15. PMID: 35840324.

33. Hartman AG, McKendry S, Soehner A, Bodison S, Akcakaya M, DeAlmeida D, Bendixen R. Characterizing Sleep Differences in Children With and Without Sensory Sensitivities. Front Psychol. 2022 Jun 22;13:875766. eCollection 2022. PMID: 35814144.

34. Guo R, Vaughan DT, Rojo ALA, Huang YH. Sleep-mediated regulation of reward circuits: implications in substance use disorders. Neuropsychopharmacology. 2023  Jan;48(1):61-78. Epub 2022 Jun 16. Review. PMID: 35710601.

35. Hasler BP, Graves JL, Wallace ML, Claudatos S, Franzen PL, Nooner KB, Brown SA, Tapert SF, Baker FC, Clark DB. Self-reported sleep and circadian characteristics predict alcohol and cannabis use: A longitudinal analysis of the National Consortium on Alcohol and Neurodevelopment in Adolescence Study. Alcohol Clin Exp Res. 2022 May;46(5):848-860 Epub 2022 May 17. PMID: 35579668.

36. de Zambotti M, Menghini L, Grandner MA, Redline S, Zhang Y, Wallace ML, Buxton OM. Rigorous performance evaluation (previously, "validation") for informed use of new technologies for sleep health measurement. Sleep Health. 2022 Jun;8(3):263-269. Epub 2022 May 3. PMID: 35513978.

37. Tighe CA, Buysse DJ, Weiner DK, Beehler GP, Forman DE. Prevalence, Impact, and Trajectories of Sleep Disturbance in Cardiac Rehabilitation: A NARRATIVE REVIEW AND SUGGESTIONS FOR EVALUATION AND TREATMENT. J Cardiopulm Rehabil Prev. 2022 Sep 1;42(5):316-323. Epub 2022 May 2. Review. PMID: 35522949.

38. Becker-Krail DD, Ketchesin KD, Burns JN, Zong W, Hildebrand MA, DePoy LM, Vadnie CA, Tseng GC, Logan RW, Huang YH, McClung CA. Astrocyte Molecular Clock Function in the Nucleus Accumbens Is Important for Reward-Related Behavior. Biol Psychiatry. 2022 Jul 1;92(1):68-80. Epub 2022 Feb 18. PMID: 35461698.

39. Hasler BP, Graves JL, Soehner AM, Wallace ML, Clark DB. Preliminary Evidence That Circadian Alignment Predicts Neural Response to Monetary Reward in Late Adolescent Drinkers. Front Neurosci. 2022 Feb 16;16:803349. eCollection 2022. PMID: 35250449.

40. Hasler BP, Wallace ML, Graves JL, Molina BSG, Pedersen SL. Circadian preference is associated with multiple domains of trait and state level impulsivity. Chronobiol Int. 2022 Jun;39(6):792-804. Epub 2022 Feb 10. PMID: 35144510.

41. Wallace ML, Kissel N, Hall MH, Germain A, Matthews KA, Troxel WM, Franzen PL, Buysse DJ, Reynolds C 3rd, Roecklein KA, Gunn HE, Hasler BP, Goldstein TR, McMakin DL, Szigethy E, Soehner AM. Age Trends in Actigraphy and Self-Report Sleep Across the Life Span: Findings From the Pittsburgh Lifespan Sleep Databank. Psychosom Med. 2022 May 1;84(4):410-420. Epub 2022 Jan 28. PMID: 35100181.

42. Becker-Krail DD, Parekh PK, Ketchesin KD, Yamaguchi S, Yoshino J, Hildebrand MA,  Dunham B, Ganapathiraju MK, Logan RW, McClung CA. Circadian transcription factor NPAS2 and the NAD(+) -dependent deacetylase SIRT1 interact in the mouse nucleus accumbens and regulate reward. Eur J Neurosci. 2022 Feb;55(3):675-693. Epub 2022 Jan 20. PMID: 35001440.

43. Wallace ML, McTeague L, Graves JL, Kissel N, Tortora C, Wheeler B, Iyengar S. Quantifying Distances Between Non-Elliptical Clusters to Enhance the Identification of Meaningful Emotional Reactivity Subtypes. Data Sci Sci. 2022;1(1):34-59. Epub 2023 Jan 18. PMID: 37162763.

44. Palmer CE, Sheth C, Marshall AT, Adise S, Baker FC, Chang L, Clark DB, Coronado C, Dagher RK, Diaz V, Dowling GJ, Gonzalez MR, Haist F, Herting MM, Huber RS, Jernigan TL, LeBlanc K, Lee K, Lisdahl KM, Neigh G, Patterson MW, Renshaw P, et al. A Comprehensive Overview of the Physical Health of the Adolescent Brain Cognitive Development Study Cohort at Baseline. Front Pediatr. 2021 Oct 5;9:734184. eCollection 2021. PMID: 34692610.

45. Zaks N, Velikonja T, Parvaz MA, Zinberg J, Done M, Mathalon DH, Addington J, Cadenhead K, Cannon T, Cornblatt B, McGlashan T, Perkins D, Stone WS, Tsuang M, Walker E, Woods SW, Keshavan MS, Buysse DJ, Velthorst E, Bearden CE. Sleep Disturbance in Individuals at Clinical High Risk for Psychosis. Schizophr Bull. 2022 Jan 21;48(1):111-121. PMID: 34536012.

46. Hasler BP, McClung CA. Delayed circadian rhythms and substance abuse: dopamine transmission's time has come. J Clin Invest. 2021 Sep 15;131(18). PMID: 34523611.

47. Levenson JC, Ford HA, Reyes ZMD, Mukundan A, Patel G, Bahary S, Miller E. Designing adolescent sleep interventions with stakeholder input. Sleep Health. 2021 Oct;7(5):581-587. Epub 2021 Aug 31. PMID: 34474988.

48. Lisdahl KM, Tapert S, Sher KJ, Gonzalez R, Nixon SJ, Feldstein Ewing SW, Conway KP, Wallace A, Sullivan R, Hatcher K, Kaiver C, Thompson W, Reuter C, Bartsch H, Wade NE, Jacobus J, Albaugh MD, Allgaier N, Anokhin AP, Bagot K, Baker FC, Banich MT, et al. Substance use patterns in 9-10 year olds: Baseline findings from the adolescent brain cognitive development (ABCD) study. Drug Alcohol Depend. 2021 Oct 1;227:108946. Epub 2021 Jul 29. PMID: 34392051.

50. Kliamovich D, Jones SA, Chiapuzio AM, Baker FC, Clark DB, Nagel BJ. Sex-specific patterns of white matter microstructure are associated with emerging depression during adolescence. Psychiatry Res Neuroimaging. 2021 Sep 30;315:111324. Epub 2021 Jun 29. PMID: 34273656.

51. Ding H, Meng L, Liu AC, Gumz ML, Bryant AJ, Mcclung CA, Tseng GC, Esser KA, Huo Z. Likelihood-based tests for detecting circadian rhythmicity and differential circadian patterns in transcriptomic applications. Brief Bioinform. 2021 Nov 5;22(6). PMID: 34117739.

52. McCabe CJ, Wall TL, Gonzalez MR, Meruelo AD, Eberson-Shumate SC, Clark DB, Nooner KB, Brown SA, Tapert SF. Associations of developmental imbalance between sensation seeking and premeditation in adolescence and heavy episodic drinking in emerging adulthood. Alcohol Clin Exp Res. 2021 Jun;45(6):1249-1264. Epub 2021 May 15. PMID: 33991389.

53. Jalbrzikowski M, Hayes RA, Scully KE, Franzen PL, Hasler BP, Siegle GJ, Buysse DJ, Dahl RE, Forbes EE, Ladouceur CD, McMakin DL, Ryan ND, Silk JS, Goldstein TR, Soehner AM. Associations between brain structure and sleep patterns across adolescent development. Sleep. 2021 Oct 11;44(10). PMID: 33971013.

54. Zinsmaier AK, Dong Y, Huang YH. Cocaine-induced projection-specific and cell type-specific adaptations in the nucleus accumbens. Mol Psychiatry. 2022 Jan;27(1):669-686. Epub 2021 May 7. Review. PMID: 33963288.

55. Isaiah A, Ernst T, Cloak CC, Clark DB, Chang L. Associations between frontal lobe structure, parent-reported obstructive sleep disordered breathing and childhood behavior in the ABCD dataset. Nat Commun. 2021 Apr 13;12(1):2205. PMID: 33850154.

56. Birmaher B, Merranko J, Hafeman D, Goldstein BI, Diler R, Levenson JC, Monk K, Iyengar S, Hickey MB, Sakolsky D, Axelson D, Goldstein T. A Longitudinal Study of Psychiatric Disorders in Offspring of Parents With Bipolar Disorder From Preschool to Adolescence. J Am Acad Child Adolesc Psychiatry. 2021 Nov;60(11):1419-1429. Epub 2021 Mar 27. PMID: 33785405.

57. Hasler BP, Soehner AM, Wallace ML, Logan RW, Ngari W, Forbes EE, Buysse DJ, Clark DB. Experimentally imposed circadian misalignment alters the neural response to monetary rewards and response inhibition in healthy adolescents. Psychol Med. 2021 Mar 17:1-9. [Epub ahead of print] PMID: 33729109.

58. Kim SM, Vadnie CA, Philip VM, Gagnon LH, Chowdari KV, Chesler EJ, McClung CA, Logan RW. High-throughput measurement of fibroblast rhythms reveals genetic heritability of circadian phenotypes in diversity outbred mice and their founder strains. Sci Rep. 2021 Jan 28;11(1):2573. PMID: 33510298.

59. Vaughn-Coaxum RA, Merranko J, Birmaher B, Dickstein DP, Hafeman D, Levenson JC, Liao F, Gill MK, Hower H, Goldstein BI, Strober M, Ryan ND, Diler R, Keller MB, Yen S, Weinstock LM, Axelson D, Goldstein TR. Longitudinal course of depressive symptom severity among youths with bipolar disorders: Moderating influences of sustained attention and history of child maltreatment. J Affect Disord. 2021 Mar 1;282:261-271. Epub 2020 Dec 24. PMID: 33418377.

60. Vadnie CA, DePoy LM, McClung CA. Measuring the Effects of Circadian Rhythm-Related Manipulations on Depression-Like Behavior in Rodents: Forced Swim  and Tail Suspension Tests. Methods Mol Biol. 2021;2130:69-78. PMID: 33284436.

61. Hisler GC, Rothenberger SD, Clark DB, Hasler BP. Is there a 24-hour rhythm in alcohol craving and does it vary by sleep/circadian timing? Chronobiol Int. 2021 Jan;38(1):109-121. Epub 2020 Nov 9. PMID: 33167734.

62. Hasler BP, Bruce S, Scharf D, Ngari W, Clark DB. Circadian misalignment and weekend alcohol use in late adolescent drinkers: preliminary evidence. Chronobiol Int. 2019 Jun;36(6):796-810. Epub 2019 Apr 5. PMID: 30950299.

63. Soehner AM, Bertocci MA, Levenson JC, Goldstein TR, Rooks B, Merranko J, Hafeman D, Diler R, Axelson D, Goldstein BI, Hickey MB, Monk K, Phillips ML, Birmaher B. Longitudinal Associations Between Sleep Patterns and Psychiatric Symptom Severity in High-Risk and Community Comparison Youth. J Am Acad Child Adolesc Psychiatry. 2019 Jun;58(6):608-617. Epub 2019 Mar 6. PMID: 30851396.

64. Logan RW, McClung CA. Rhythms of life: circadian disruption and brain disorders across the lifespan. Nat Rev Neurosci. 2019 Jan;20(1):49-65. Review. PMID: 30459365.

65. Ketchesin KD, Becker-Krail D, McClung CA. Mood-related central and peripheral clocks. Eur J Neurosci. 2020 Jan;51(1):326-345. Epub 2018 Nov 29. Review. PMID: 30402924.

66. Purohit K, Parekh PK, Kern J, Logan RW, Liu Z, Huang Y, McClung CA, Crabbe JC, Ozburn AR. Pharmacogenetic Manipulation of the Nucleus Accumbens Alters Binge-Like Alcohol Drinking in Mice. Alcohol Clin Exp Res. 2018 May;42(5):879-888. Epub 2018 Apr 18. PMID: 29668112.

67. Logan RW, Hasler BP, Forbes EE, Franzen PL, Torregrossa MM, Huang YH, Buysse DJ, Clark DB, McClung CA. Impact of Sleep and Circadian Rhythms on Addiction Vulnerability in Adolescents. Biol Psychiatry. 2018 Jun 15;83(12):987-996. Epub 2017 Dec 15. Review. PMID: 29373120.

68. Ding Y, Chang LC, Wang X, Guilloux JP, Parrish J, Oh H, French BJ, Lewis DA,Tseng GC, Sibille E. Molecular and Genetic Characterization of Depression:Overlap with other Psychiatric Disorders and Aging. Version 2. Mol Neuropsychiatry. 2015 May;1(1):1-12. PMID: 26213687.